Uses of Package
org.biojava.bio.gui.sequence

Packages that use org.biojava.bio.gui.sequence

Package	Description
org.biojava.bio.gui.sequence	Graphical displays of biological sequences and associated annotations.

Classes in org.biojava.bio.gui.sequence used by org.biojava.bio.gui.sequence

Class and Description
AbstractBeadRenderer AbstractBeadRenderer is a an abstract base class for the creation of FeatureRenderers which use a 'string of beads' metaphor for displaying features.
AbstractPeptideDigestRenderer A SequenceRenderer that renders a set of Features that match a FeatureFilter in such a way that they do not overlap in the display.
BasicFeatureRenderer
BeadFeatureRenderer BeadFeatureRenderers use a 'string of beads' metaphor for displaying features.
CircularFeatureRenderer
CircularRenderer Render information from a CircularRendererContext onto a graphics context.
CircularRendererContext A context providing information for rendering sequences into circular coordinate systems.
FeatureLabelRenderer.LabelMaker
FeatureRenderer
FeatureSource A closure that allows AbstractPeptideDigestRenderer implementations to obtain the features of the rendered sequence.
FilteringRenderer
GlyphFeatureRenderer A FeatureRenderer that renders a particular Glyph for Features accepted by a particular FeatureFilter
ImageMap ImageMap represents a collection of image map hotspots.
ImageMap.HotSpot HotSpots represent an image map hotspot.
ImageMapRenderer ImageMapRenderers create strings representing Features suitable for use in HTML image maps.
LabelRenderer The interface for things that can render labels for a line of information about a sequence.
LayeredRenderer LayeredRenderer handles the lane offsets for MultiLineRenders.
MultiLineRenderer MultiLineRenderer is a SequenceRenderer which collects a number of other SequenceRenderers each of which render their own view of a Sequence.
OverlayMarker This is a dummy interface to permit identification of renderers whose output is to be overlaid along the lines of the Marker Interface pattern.
PairwiseRenderContext PairwiseRenderContext encapsulates information required for the rendering of a pair of sequences.
PairwiseSequenceRenderer PairwiseSequenceRenderers render information about the relationship between two sequences.
RectangularBeadRenderer RectangularBeadRenderer renders features as simple rectangles.
SequencePanel A panel that displays a Sequence.
SequenceRenderContext A context within which sequence information may be rendered.
SequenceRenderContext.Border The metric object for the 'border' area - the area between the extent of the rendered area and the beginning or end of the sequence.
SequenceRenderer The interface for things that can render a line of information about a sequence.
SequenceRendererWrapper An implementation of SequenceRenderer that delegates rendering to another renderer.
SequenceViewerEvent An event indicating that a mouse gesture was recognised within a widget that renders sequences.
SequenceViewerListener
SequenceViewerMotionListener
SixFrameRenderer Class that handles drawing in six frames for other classes.
ZiggyFeatureRenderer A feature renderer that draws non-contiguous features as a set of boxes joined by zig-zags.