org.dishevelled.bio.assembly.gfa1

Class Gfa1Adapter

java.lang.Object

org.dishevelled.bio.assembly.gfa1.Gfa1Adapter

All Implemented Interfaces:

Gfa1Listener

public abstract class Gfa1Adapter
extends Object
implements Gfa1Listener

Abstract implementation of a Graphical Fragment Assembly (GFA) 1.0 listener.

Author:

Michael Heuer

Constructor Summary

Constructors

Constructor and Description
Gfa1Adapter()

Method Summary

Modifier and Type	Method and Description
protected boolean	containment(Containment containment) Notify this abstract GFA 1.0 listener of a GFA 1.0 containment.
protected boolean	header(Header header) Notify this abstract GFA 1.0 listener of a GFA 1.0 header.
protected boolean	link(Link link) Notify this abstract GFA 1.0 listener of a GFA 1.0 link.
protected boolean	path(Path path) Notify this abstract GFA 1.0 listener of a GFA 1.0 path.
boolean	record(Gfa1Record record) Notify this GFA 1.0 listener of a GFA 1.0 record.
protected boolean	segment(Segment segment) Notify this abstract GFA 1.0 listener of a GFA 1.0 segment.
protected boolean	traversal(Traversal traversal) Notify this abstract GFA 1.0 listener of a GFA 1.0 traversal.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Gfa1Adapter

public Gfa1Adapter()

Method Detail

record

public final boolean record(Gfa1Record record)

Description copied from interface: Gfa1Listener

Notify this GFA 1.0 listener of a GFA 1.0 record.

Specified by:

record in interface Gfa1Listener

Parameters:

record - GFA 1.0 record

Returns:

true to continue processing, false to stop

containment

protected boolean containment(Containment containment)

Notify this abstract GFA 1.0 listener of a GFA 1.0 containment.

Parameters:

containment - GFA 1.0 containment

Returns:

true to continue processing, false to stop

header

protected boolean header(Header header)

Notify this abstract GFA 1.0 listener of a GFA 1.0 header.

Parameters:

header - GFA 1.0 header

Returns:

true to continue processing, false to stop

path

protected boolean path(Path path)

Notify this abstract GFA 1.0 listener of a GFA 1.0 path.

Parameters:

path - GFA 1.0 path

Returns:

true to continue processing, false to stop

link

protected boolean link(Link link)

Notify this abstract GFA 1.0 listener of a GFA 1.0 link.

Parameters:

link - GFA 1.0 link

Returns:

true to continue processing, false to stop

segment

protected boolean segment(Segment segment)

Notify this abstract GFA 1.0 listener of a GFA 1.0 segment.

Parameters:

segment - GFA 1.0 segment

Returns:

true to continue processing, false to stop

traversal

protected boolean traversal(Traversal traversal)

Notify this abstract GFA 1.0 listener of a GFA 1.0 traversal.

Parameters:

traversal - GFA 1.0 traversal

Returns:

true to continue processing, false to stop