org.dishevelled.bio.assembly.gfa2

Class Gfa2Adapter

java.lang.Object

org.dishevelled.bio.assembly.gfa2.Gfa2Adapter

All Implemented Interfaces:

Gfa2Listener

public abstract class Gfa2Adapter
extends Object
implements Gfa2Listener

Abstract implementation of a Graphical Fragment Assembly (GFA) 2.0 listener.

Author:

Michael Heuer

Constructor Summary

Constructors

Constructor and Description
Gfa2Adapter()

Method Summary

Modifier and Type	Method and Description
protected boolean	edge(Edge edge) Notify this abstract GFA 2.0 listener of a GFA 2.0 edge.
protected boolean	fragment(Fragment fragment) Notify this abstract GFA 2.0 listener of a GFA 2.0 fragment.
protected boolean	gap(Gap gap) Notify this abstract GFA 2.0 listener of a GFA 2.0 gap.
protected boolean	header(Header header) Notify this abstract GFA 2.0 listener of a GFA 2.0 header.
protected boolean	path(Path path) Notify this abstract GFA 2.0 listener of a GFA 2.0 path.
boolean	record(Gfa2Record record) Notify this GFA 2.0 listener of a GFA 2.0 record.
protected boolean	segment(Segment segment) Notify this abstract GFA 2.0 listener of a GFA 2.0 segment.
protected boolean	set(Set set) Notify this abstract GFA 2.0 listener of a GFA 2.0 set.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Gfa2Adapter

public Gfa2Adapter()

Method Detail

record

public final boolean record(Gfa2Record record)

Description copied from interface: Gfa2Listener

Notify this GFA 2.0 listener of a GFA 2.0 record.

Specified by:

record in interface Gfa2Listener

Parameters:

record - GFA 2.0 record

Returns:

true to continue processing, false to stop

edge

protected boolean edge(Edge edge)

Notify this abstract GFA 2.0 listener of a GFA 2.0 edge.

Parameters:

edge - GFA 2.0 edge

Returns:

true to continue processing, false to stop

fragment

protected boolean fragment(Fragment fragment)

Notify this abstract GFA 2.0 listener of a GFA 2.0 fragment.

Parameters:

fragment - GFA 2.0 fragment

Returns:

true to continue processing, false to stop

gap

protected boolean gap(Gap gap)

Notify this abstract GFA 2.0 listener of a GFA 2.0 gap.

Parameters:

gap - GFA 2.0 gap

Returns:

true to continue processing, false to stop

header

protected boolean header(Header header)

Notify this abstract GFA 2.0 listener of a GFA 2.0 header.

Parameters:

header - GFA 2.0 header

Returns:

true to continue processing, false to stop

path

protected boolean path(Path path)

Notify this abstract GFA 2.0 listener of a GFA 2.0 path.

Parameters:

path - GFA 2.0 path

Returns:

true to continue processing, false to stop

segment

protected boolean segment(Segment segment)

Notify this abstract GFA 2.0 listener of a GFA 2.0 segment.

Parameters:

segment - GFA 2.0 segment

Returns:

true to continue processing, false to stop

set

protected boolean set(Set set)

Notify this abstract GFA 2.0 listener of a GFA 2.0 set.

Parameters:

set - GFA 2.0 set

Returns:

true to continue processing, false to stop