| Package | Description |
|---|---|
| org.dishevelled.bio.assembly.gfa2 |
Graphical Fragment Assembly (GFA) 2.0 support.
|
| Modifier and Type | Class and Description |
|---|---|
class |
Edge
Edge GFA 2.0 record.
|
class |
Fragment
Fragment GFA 2.0 record.
|
class |
Gap
Gap GFA 2.0 record.
|
class |
Header
Header GFA 2.0 record.
|
class |
Path
Path GFA 2.0 record.
|
class |
Segment
Segment GFA 2.0 record.
|
class |
Set
Set GFA 2.0 record.
|
| Modifier and Type | Method and Description |
|---|---|
static Iterable<Gfa2Record> |
Gfa2Reader.read(Readable readable)
Read zero or more GFA 2.0 records from the specified readable.
|
| Modifier and Type | Method and Description |
|---|---|
boolean |
Gfa2Adapter.record(Gfa2Record record) |
boolean |
Gfa2Listener.record(Gfa2Record record)
Notify this GFA 2.0 listener of a GFA 2.0 record.
|
static void |
Gfa2Writer.write(Gfa2Record record,
PrintWriter writer)
Write the specified GFA 2.0 record with the specified print writer.
|
| Modifier and Type | Method and Description |
|---|---|
static void |
Gfa2Writer.write(Iterable<Gfa2Record> records,
PrintWriter writer)
Write zero or more GFA 2.0 records with the specified print writer.
|
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