Uses of Class
org.dishevelled.bio.assembly.gfa2.Position

Packages that use Position

Package	Description
org.dishevelled.bio.assembly.gfa2	Graphical Fragment Assembly (GFA) 2.0 support.

Uses of Position in org.dishevelled.bio.assembly.gfa2

Methods in org.dishevelled.bio.assembly.gfa2 that return Position

Modifier and Type	Method and Description
Position	Fragment.getFragmentEnd() Return the fragment end position for this fragment.
Position	Fragment.getFragmentStart() Return the fragment start position for this fragment.
Position	Fragment.getSegmentEnd() Return the segment end position for this fragment.
Position	Fragment.getSegmentStart() Return the segment start position for this fragment.
Position	Edge.getSourceEnd() Return the source end position for this edge.
Position	Edge.getSourceStart() Return the source start position for this edge.
Position	Edge.getTargetEnd() Return the target end position for this edge.
Position	Edge.getTargetStart() Return the target start position for this edge.
static Position	Position.valueOf(String value) Parse a position from the specified value.

Constructors in org.dishevelled.bio.assembly.gfa2 with parameters of type Position

Constructor and Description
Edge(String id, Reference source, Reference target, Position sourceStart, Position sourceEnd, Position targetStart, Position targetEnd, Alignment alignment, Map<String,Tag> tags) Create a new edge GFA 2.0 record.
Fragment(String segmentId, Reference external, Position segmentStart, Position segmentEnd, Position fragmentStart, Position fragmentEnd, Alignment alignment, Map<String,Tag> tags) Create a new fragment GFA 2.0 record.