All Classes

Class Summary

Class	Description
DisinterleaveFastqBenchmarks	DisinterleaveFastq benchmarks.
DisinterleaveFastqBenchmarks_disinterleaveFastq_jmhTest
DisinterleaveFastqBenchmarks_jmhType
DisinterleaveFastqBenchmarks_jmhType_B1
DisinterleaveFastqBenchmarks_jmhType_B2
DisinterleaveFastqBenchmarks_jmhType_B3
FilterGafBenchmarks	FilterGaf benchmarks.
FilterGafBenchmarks_filterGafByMappingQuality_jmhTest
FilterGafBenchmarks_jmhType
FilterGafBenchmarks_jmhType_B1
FilterGafBenchmarks_jmhType_B2
FilterGafBenchmarks_jmhType_B3
FilterPafBenchmarks	FilterPaf benchmarks.
FilterPafBenchmarks_filterPafByMappingQuality_jmhTest
FilterPafBenchmarks_jmhType
FilterPafBenchmarks_jmhType_B1
FilterPafBenchmarks_jmhType_B2
FilterPafBenchmarks_jmhType_B3
FilterSamBenchmarks	FilterSam benchmarks.
FilterSamBenchmarks_filterSamByMapq_jmhTest
FilterSamBenchmarks_jmhType
FilterSamBenchmarks_jmhType_B1
FilterSamBenchmarks_jmhType_B2
FilterSamBenchmarks_jmhType_B3
FilterSamHtsjdkBenchmarks	FilterSam-equivalent in htsjdk benchmarks.
FilterSamHtsjdkBenchmarks_filterSamByMapq_jmhTest
FilterSamHtsjdkBenchmarks_jmhType
FilterSamHtsjdkBenchmarks_jmhType_B1
FilterSamHtsjdkBenchmarks_jmhType_B2
FilterSamHtsjdkBenchmarks_jmhType_B3
FilterVcfBenchmarks	FilterVcf benchmarks.
FilterVcfBenchmarks_filterVcfByQualityScore_jmhTest
FilterVcfBenchmarks_jmhType
FilterVcfBenchmarks_jmhType_B1
FilterVcfBenchmarks_jmhType_B2
FilterVcfBenchmarks_jmhType_B3
FilterVcfHtsjdkBenchmarks	FilterVcf-equivalent in htsjdk benchmarks.
FilterVcfHtsjdkBenchmarks_filterVcfByQualityScore_jmhTest
FilterVcfHtsjdkBenchmarks_jmhType
FilterVcfHtsjdkBenchmarks_jmhType_B1
FilterVcfHtsjdkBenchmarks_jmhType_B2
FilterVcfHtsjdkBenchmarks_jmhType_B3
GenerateGaf	Generate GAF for benchmarking.
InterleaveFastqBenchmarks	InterleaveFastq benchmarks.
InterleaveFastqBenchmarks_interleaveFastq_jmhTest
InterleaveFastqBenchmarks_jmhType
InterleaveFastqBenchmarks_jmhType_B1
InterleaveFastqBenchmarks_jmhType_B2
InterleaveFastqBenchmarks_jmhType_B3
runFilterSamHtsjdkOnce	Separate main to run FilterSam-equivalent in htsjdk benchmark once.
runFilterVcfHtsjdkOnce	Separate main to run FilterVcf-equivalent in htsjdk benchmark once.
SamCollectBenchmarks	SAM collect benchmarks.
SamCollectBenchmarks_collectSamAppendOnlyLinkedList_jmhTest
SamCollectBenchmarks_collectSamLargeCapacityArrayList_jmhTest
SamCollectBenchmarks_collectSamLinkedList_jmhTest
SamCollectBenchmarks_collectSamSmallCapacityArrayList_jmhTest
SamCollectBenchmarks_jmhType
SamCollectBenchmarks_jmhType_B1
SamCollectBenchmarks_jmhType_B2
SamCollectBenchmarks_jmhType_B3
Utils	Benchmarks utility methods.