org.dishevelled.bio.tools

Class CompressFastq

java.lang.Object

org.dishevelled.bio.tools.CompressFastq

All Implemented Interfaces:

Callable<Integer>

public final class CompressFastq
extends Object
implements Callable<Integer>

Compress sequences in FASTQ format to splittable bgzf or bzip2 compression codecs.

Since:

1.1

Author:

Michael Heuer

Constructor Summary

Constructors

Constructor and Description
CompressFastq(File inputFastqFile, File outputFastqFile) Compress sequences in FASTQ format to splittable bgzf or bzip2 compression codecs.
CompressFastq(Path inputFastqPath, File outputFastqFile) Compress sequences in FASTQ format to splittable bgzf or bzip2 compression codecs.

Method Summary

Modifier and Type	Method and Description
Integer	call()
static void	main(String[] args) Main.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CompressFastq

public CompressFastq(File inputFastqFile,
                     File outputFastqFile)

Compress sequences in FASTQ format to splittable bgzf or bzip2 compression codecs.

Parameters:

inputFastqFile - input FASTQ file, if any

outputFastqFile - output FASTQ file, if any

CompressFastq

public CompressFastq(Path inputFastqPath,
                     File outputFastqFile)

Compress sequences in FASTQ format to splittable bgzf or bzip2 compression codecs.

Parameters:

inputFastqPath - input FASTQ path, if any

outputFastqFile - output FASTQ file, if any

Since:

2.1

Method Detail

call

public Integer call()
             throws Exception

Specified by:

call in interface Callable<Integer>

Throws:

Exception

main

public static void main(String[] args)

Main.

Parameters:

args - command line args