org.dishevelled.bio.tools

Class CompressGfa1

java.lang.Object

org.dishevelled.bio.tools.CompressGfa1

All Implemented Interfaces:

Callable<Integer>

public final class CompressGfa1
extends Object
implements Callable<Integer>

Compress assembly in GFA 1.0 format to splittable bgzf or bzip2 compression codecs.

Since:

1.3

Author:

Michael Heuer

Constructor Summary

Constructors

Constructor and Description
CompressGfa1(File inputGfa1File, File outputGfa1File) Compress assembly in GFA 1.0 format to splittable bgzf or bzip2 compression codecs.
CompressGfa1(Path inputGfa1Path, File outputGfa1File) Compress assembly in GFA 1.0 format to splittable bgzf or bzip2 compression codecs.

Method Summary

Modifier and Type	Method and Description
Integer	call()
static void	main(String[] args) Main.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CompressGfa1

public CompressGfa1(File inputGfa1File,
                    File outputGfa1File)

Compress assembly in GFA 1.0 format to splittable bgzf or bzip2 compression codecs.

Parameters:

inputGfa1File - input GFA 1.0 file, if any

outputGfa1File - output GFA 1.0 file, if any

CompressGfa1

public CompressGfa1(Path inputGfa1Path,
                    File outputGfa1File)

Compress assembly in GFA 1.0 format to splittable bgzf or bzip2 compression codecs.

Parameters:

inputGfa1Path - input GFA 1.0 path, if any

outputGfa1File - output GFA 1.0 file, if any

Since:

2.1

Method Detail

call

public Integer call()
             throws Exception

Specified by:

call in interface Callable<Integer>

Throws:

Exception

main

public static void main(String[] args)

Main.

Parameters:

args - command line args