org.dishevelled.bio.tools

Class CompressGff3

java.lang.Object

org.dishevelled.bio.tools.CompressGff3

All Implemented Interfaces:

Callable<Integer>

public final class CompressGff3
extends Object
implements Callable<Integer>

Compress features in GFF3 format to splittable bgzf or bzip2 compression codecs.

Since:

1.1

Author:

Michael Heuer

Constructor Summary

Constructors

Constructor and Description
CompressGff3(File inputGff3File, File outputGff3File) Compress features in GFF3 format to splittable bgzf or bzip2 compression codecs.
CompressGff3(Path inputGff3Path, File outputGff3File) Compress features in GFF3 format to splittable bgzf or bzip2 compression codecs.

Method Summary

Modifier and Type	Method and Description
Integer	call()
static void	main(String[] args) Main.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CompressGff3

public CompressGff3(File inputGff3File,
                    File outputGff3File)

Compress features in GFF3 format to splittable bgzf or bzip2 compression codecs.

Parameters:

inputGff3File - input GFF3 file, if any

outputGff3File - output GFF3 file, if any

CompressGff3

public CompressGff3(Path inputGff3Path,
                    File outputGff3File)

Compress features in GFF3 format to splittable bgzf or bzip2 compression codecs.

Parameters:

inputGff3Path - input GFF3 path, if any

outputGff3File - output GFF3 file, if any

Since:

2.1

Method Detail

call

public Integer call()
             throws Exception

Specified by:

call in interface Callable<Integer>

Throws:

Exception

main

public static void main(String[] args)

Main.

Parameters:

args - command line args