org.dishevelled.bio.tools

Class CompressPaf

java.lang.Object

org.dishevelled.bio.tools.CompressPaf

All Implemented Interfaces:

Callable<Integer>

public final class CompressPaf
extends Object
implements Callable<Integer>

Compress alignments in PAF format to splittable bgzf or bzip2 compression codecs.

Since:

1.4

Author:

Michael Heuer

Constructor Summary

Constructors

Constructor and Description
CompressPaf(File inputPafFile, File outputPafFile) Compress alignments in PAF format to splittable bgzf or bzip2 compression codecs.
CompressPaf(Path inputPafPath, File outputPafFile) Compress alignments in PAF format to splittable bgzf or bzip2 compression codecs.

Method Summary

Modifier and Type	Method and Description
Integer	call()
static void	main(String[] args) Main.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CompressPaf

public CompressPaf(File inputPafFile,
                   File outputPafFile)

Compress alignments in PAF format to splittable bgzf or bzip2 compression codecs.

Parameters:

inputPafFile - input PAF file, if any

outputPafFile - output PAF file, if any

CompressPaf

public CompressPaf(Path inputPafPath,
                   File outputPafFile)

Compress alignments in PAF format to splittable bgzf or bzip2 compression codecs.

Parameters:

inputPafPath - input PAF path, if any

outputPafFile - output PAF file, if any

Since:

2.1

Method Detail

call

public Integer call()
             throws Exception

Specified by:

call in interface Callable<Integer>

Throws:

Exception

main

public static void main(String[] args)

Main.

Parameters:

args - command line args