org.dishevelled.bio.tools

Class CompressRgfa

java.lang.Object

org.dishevelled.bio.tools.CompressRgfa

All Implemented Interfaces:

Callable<Integer>

public final class CompressRgfa
extends Object
implements Callable<Integer>

Compress assembly in rGFA format to splittable bgzf or bzip2 compression codecs.

Since:

2.1

Author:

Michael Heuer

Constructor Summary

Constructors

Constructor and Description
CompressRgfa(File inputRgfaFile, File outputRgfaFile) Compress assembly in rGFA format to splittable bgzf or bzip2 compression codecs.
CompressRgfa(Path inputRgfaPath, File outputRgfaFile) Compress assembly in rGFA format to splittable bgzf or bzip2 compression codecs.

Method Summary

Modifier and Type	Method and Description
Integer	call()
static void	main(String[] args) Main.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CompressRgfa

public CompressRgfa(File inputRgfaFile,
                    File outputRgfaFile)

Compress assembly in rGFA format to splittable bgzf or bzip2 compression codecs.

Parameters:

inputRgfaFile - input rGFA file, if any

outputRgfaFile - output rGFA file, if any

CompressRgfa

public CompressRgfa(Path inputRgfaPath,
                    File outputRgfaFile)

Compress assembly in rGFA format to splittable bgzf or bzip2 compression codecs.

Parameters:

inputRgfaPath - input rGFA path, if any

outputRgfaFile - output rGFA file, if any

Since:

2.1

Method Detail

call

public Integer call()
             throws Exception

Specified by:

call in interface Callable<Integer>

Throws:

Exception

main

public static void main(String[] args)

Main.

Parameters:

args - command line args