org.dishevelled.bio.tools

Class DisinterleaveFastq

java.lang.Object

org.dishevelled.bio.tools.DisinterleaveFastq

All Implemented Interfaces:

Callable<Integer>

public final class DisinterleaveFastq
extends Object
implements Callable<Integer>

Convert interleaved FASTQ format into first and second DNA sequence files in FASTQ format.

Author:

Michael Heuer

Constructor Summary

Constructors

Constructor and Description
DisinterleaveFastq(File pairedFile, File unpairedFile, File firstFastqFile, File secondFastqFile) Convert interleaved FASTQ format into first and second DNA sequence files in FASTQ format.
DisinterleaveFastq(Path pairedPath, Path unpairedPath, File firstFastqFile, File secondFastqFile) Convert interleaved FASTQ format into first and second DNA sequence files in FASTQ format.

Method Summary

Modifier and Type	Method and Description
Integer	call()
static void	main(String[] args) Main.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DisinterleaveFastq

public DisinterleaveFastq(File pairedFile,
                          File unpairedFile,
                          File firstFastqFile,
                          File secondFastqFile)

Convert interleaved FASTQ format into first and second DNA sequence files in FASTQ format.

Parameters:

pairedFile - input interleaved paired FASTQ file, must not be null

unpairedFile - input unpaired FASTQ file, if any

firstFastqFile - first FASTQ output file, must not be null

secondFastqFile - second FASTQ output file, must not be null

DisinterleaveFastq

public DisinterleaveFastq(Path pairedPath,
                          Path unpairedPath,
                          File firstFastqFile,
                          File secondFastqFile)

Convert interleaved FASTQ format into first and second DNA sequence files in FASTQ format.

Parameters:

pairedPath - input interleaved paired FASTQ path, must not be null

unpairedPath - input unpaired FASTQ file, if any

firstFastqFile - first FASTQ output file, must not be null

secondFastqFile - second FASTQ output file, must not be null

Since:

2.1

Method Detail

call

public Integer call()
             throws Exception

Specified by:

call in interface Callable<Integer>

Throws:

Exception

main

public static void main(String[] args)

Main.

Parameters:

args - command line args