org.dishevelled.bio.tools

Class DownsampleInterleavedFastq

java.lang.Object

org.dishevelled.bio.tools.DownsampleInterleavedFastq

All Implemented Interfaces:

Callable<Integer>

public final class DownsampleInterleavedFastq
extends Object
implements Callable<Integer>

Downsample DNA sequences from a file in interleaved FASTQ format.

Author:

Michael Heuer

Constructor Summary

Constructors

Constructor and Description
DownsampleInterleavedFastq(File inputFastqFile, File outputFastqFile, org.apache.commons.math3.distribution.BinomialDistribution distribution) Downsample DNA sequences from a file in interleaved FASTQ format.
DownsampleInterleavedFastq(Path inputFastqPath, File outputFastqFile, org.apache.commons.math3.distribution.BinomialDistribution distribution) Downsample DNA sequences from a file in interleaved FASTQ format.

Method Summary

Modifier and Type	Method and Description
Integer	call()
static void	main(String[] args) Main.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DownsampleInterleavedFastq

public DownsampleInterleavedFastq(File inputFastqFile,
                                  File outputFastqFile,
                                  org.apache.commons.math3.distribution.BinomialDistribution distribution)

Downsample DNA sequences from a file in interleaved FASTQ format.

Parameters:

inputFastqFile - input interleaved FASTQ file, if any

outputFastqFile - output interleaved FASTQ file, if any

distribution - binomial distribution, must not be null

DownsampleInterleavedFastq

public DownsampleInterleavedFastq(Path inputFastqPath,
                                  File outputFastqFile,
                                  org.apache.commons.math3.distribution.BinomialDistribution distribution)

Downsample DNA sequences from a file in interleaved FASTQ format.

Parameters:

inputFastqPath - input interleaved FASTQ path, if any

outputFastqFile - output interleaved FASTQ file, if any

distribution - binomial distribution, must not be null

Since:

2.1

Method Detail

call

public Integer call()
             throws Exception

Specified by:

call in interface Callable<Integer>

Throws:

Exception

main

public static void main(String[] args)

Main.

Parameters:

args - command line args