org.dishevelled.bio.tools

Class EnsemblVariantTableToVcf

java.lang.Object

org.dishevelled.bio.tools.EnsemblVariantTableToVcf

All Implemented Interfaces:

Callable<Integer>

public class EnsemblVariantTableToVcf
extends Object
implements Callable<Integer>

Convert Ensembl variant table to VCF format.

Author:

Michael Heuer

Constructor Summary

Constructors

Constructor and Description
EnsemblVariantTableToVcf(File inputEnsemblVariantTableFile, File outputVcfFile) Convert Ensembl variant table to VCF format
EnsemblVariantTableToVcf(Path inputEnsemblVariantTablePath, File outputVcfFile) Convert Ensembl variant table to VCF format

Method Summary

Modifier and Type	Method and Description
Integer	call()
static void	main(String[] args) Main.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

EnsemblVariantTableToVcf

public EnsemblVariantTableToVcf(File inputEnsemblVariantTableFile,
                                File outputVcfFile)

Convert Ensembl variant table to VCF format

Parameters:

inputEnsemblVariantTableFile - input Ensembl variant table file, if any

outputVcfFile - output VCF file, if any

EnsemblVariantTableToVcf

public EnsemblVariantTableToVcf(Path inputEnsemblVariantTablePath,
                                File outputVcfFile)

Convert Ensembl variant table to VCF format

Parameters:

inputEnsemblVariantTablePath - input Ensembl variant table path, if any

outputVcfFile - output VCF file, if any

Since:

2.1

Method Detail

call

public Integer call()
             throws Exception

Specified by:

call in interface Callable<Integer>

Throws:

Exception

main

public static void main(String[] args)

Main.

Parameters:

args - command line args