org.dishevelled.bio.tools

Class ExtractFastqByLength

java.lang.Object

org.dishevelled.bio.tools.ExtractFastqByLength

All Implemented Interfaces:

Callable<Integer>

public final class ExtractFastqByLength
extends Object
implements Callable<Integer>

Extract DNA sequences in FASTQ format with a range of lengths.

Since:

1.1

Author:

Michael Heuer

Constructor Summary

Constructors

Constructor and Description
ExtractFastqByLength(File inputFastqFile, File outputFastqFile, int minimumLength, int maximumLength) Extract DNA sequences in FASTQ format with a range of lengths.
ExtractFastqByLength(Path inputFastqPath, File outputFastqFile, int minimumLength, int maximumLength) Extract DNA sequences in FASTQ format with a range of lengths.

Method Summary

Modifier and Type	Method and Description
Integer	call()
static void	main(String[] args) Main.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ExtractFastqByLength

public ExtractFastqByLength(File inputFastqFile,
                            File outputFastqFile,
                            int minimumLength,
                            int maximumLength)

Extract DNA sequences in FASTQ format with a range of lengths.

Parameters:

inputFastqFile - input FASTQ file, if any

outputFastqFile - output FASTQ file, if any

minimumLength - minimum sequence length, inclusive

maximumLength - maximum sequence length, exclusive

ExtractFastqByLength

public ExtractFastqByLength(Path inputFastqPath,
                            File outputFastqFile,
                            int minimumLength,
                            int maximumLength)

Extract DNA sequences in FASTQ format with a range of lengths.

Parameters:

inputFastqPath - input FASTQ path, if any

outputFastqFile - output FASTQ file, if any

minimumLength - minimum sequence length, inclusive

maximumLength - maximum sequence length, exclusive

Since:

2.1

Method Detail

call

public Integer call()
             throws Exception

Specified by:

call in interface Callable<Integer>

Throws:

Exception

main

public static void main(String[] args)

Main.

Parameters:

args - command line args