org.dishevelled.bio.tools

Class FastqSequenceLength

java.lang.Object

org.dishevelled.bio.tools.FastqSequenceLength

All Implemented Interfaces:

Callable<Integer>

public final class FastqSequenceLength
extends Object
implements Callable<Integer>

Output sequence lengths from DNA sequences in FASTQ format.

Since:

1.1

Author:

Michael Heuer

Constructor Summary

Constructors

Constructor and Description
FastqSequenceLength(File fastqFile, File sequenceLengthFile) Output sequence lengths from DNA sequences in FASTQ format.
FastqSequenceLength(Path fastqPath, File sequenceLengthFile) Output sequence lengths from DNA sequences in FASTQ format.

Method Summary

Modifier and Type	Method and Description
Integer	call()
static void	main(String[] args) Main.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FastqSequenceLength

public FastqSequenceLength(File fastqFile,
                           File sequenceLengthFile)

Output sequence lengths from DNA sequences in FASTQ format.

Parameters:

fastqFile - input FASTQ file, if any

sequenceLengthFile - output file of sequence lengths, if any

FastqSequenceLength

public FastqSequenceLength(Path fastqPath,
                           File sequenceLengthFile)

Output sequence lengths from DNA sequences in FASTQ format.

Parameters:

fastqPath - input FASTQ path, if any

sequenceLengthFile - output file of sequence lengths, if any

Since:

2.1

Method Detail

call

public Integer call()
             throws Exception

Specified by:

call in interface Callable<Integer>

Throws:

Exception

main

public static void main(String[] args)

Main.

Parameters:

args - command line args