org.dishevelled.bio.tools

Class FilterGff3

java.lang.Object

org.dishevelled.bio.tools.AbstractFilter

org.dishevelled.bio.tools.FilterGff3

All Implemented Interfaces:

Callable<Integer>

public final class FilterGff3
extends AbstractFilter

Filter features in GFF3 format.

Since:

1.1

Author:

Michael Heuer

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
(package private) static interface	FilterGff3.Filter Filter.
static class	FilterGff3.RangeFilter Range filter.
static class	FilterGff3.ScoreFilter Score filter.
static class	FilterGff3.ScriptFilter Script filter.

Constructor Summary

Constructors

Constructor and Description
FilterGff3(List<FilterGff3.Filter> filters, File inputGff3File, File outputGff3File) Filter features in GFF3 format.
FilterGff3(List<FilterGff3.Filter> filters, Path inputGff3Path, File outputGff3File) Filter features in GFF3 format.

Method Summary

Modifier and Type	Method and Description
Integer	call()
static void	main(String[] args) Main.

Methods inherited from class org.dishevelled.bio.tools.AbstractFilter

createScriptEngine

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FilterGff3

public FilterGff3(List<FilterGff3.Filter> filters,
                  File inputGff3File,
                  File outputGff3File)

Filter features in GFF3 format.

Parameters:

filters - list of filters, must not be null

inputGff3File - input GFF3 file, if any

outputGff3File - output GFF3 file, if any

FilterGff3

public FilterGff3(List<FilterGff3.Filter> filters,
                  Path inputGff3Path,
                  File outputGff3File)

Filter features in GFF3 format.

Parameters:

filters - list of filters, must not be null

inputGff3Path - input GFF3 path, if any

outputGff3File - output GFF3 file, if any

Since:

2.1

Method Detail

call

public Integer call()
             throws Exception

Throws:

Exception

main

public static void main(String[] args)

Main.

Parameters:

args - command line args