org.dishevelled.bio.tools

Class FilterSam.MapqFilter

java.lang.Object

org.dishevelled.bio.tools.FilterSam.MapqFilter

All Implemented Interfaces:

FilterSam.Filter

Enclosing class:

FilterSam

public static final class FilterSam.MapqFilter
extends Object
implements FilterSam.Filter

MAPQ filter.

Constructor Summary

Constructors

Constructor and Description
MapqFilter(int mapq) Create a new MAPQ score filter with the specified MAPQ.

Method Summary

Modifier and Type	Method and Description
boolean	accept(SamRecord record) Return true if the specified SAM record should be accepted by this filter.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MapqFilter

public MapqFilter(int mapq)

Create a new MAPQ score filter with the specified MAPQ.

Parameters:

mapq - MAPQ

Method Detail

accept

public boolean accept(SamRecord record)

Description copied from interface: FilterSam.Filter

Return true if the specified SAM record should be accepted by this filter.

Specified by:

accept in interface FilterSam.Filter

Parameters:

record - SAM record

Returns:

true if the specified SAM record should be accepted by this filter