org.dishevelled.bio.tools

Class IdentifyGfa1

java.lang.Object

org.dishevelled.bio.tools.IdentifyGfa1

All Implemented Interfaces:

Callable<Integer>

public final class IdentifyGfa1
extends Object
implements Callable<Integer>

Add identifier annotation to records in GFA 1.0 format.

Since:

2.0.3

Author:

Michael Heuer

Constructor Summary

Constructors

Constructor and Description
IdentifyGfa1(File inputGfa1File, File outputGfa1File) Add identifier annotation to records in GFA 1.0 format.
IdentifyGfa1(Path inputGfa1Path, File outputGfa1File) Add identifier annotation to records in GFA 1.0 format.

Method Summary

Modifier and Type	Method and Description
Integer	call()
static void	main(String[] args) Main.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

IdentifyGfa1

public IdentifyGfa1(File inputGfa1File,
                    File outputGfa1File)

Add identifier annotation to records in GFA 1.0 format.

Parameters:

inputGfa1File - input GFA 1.0 file, if any

outputGfa1File - output GFA 1.0 file, if any

IdentifyGfa1

public IdentifyGfa1(Path inputGfa1Path,
                    File outputGfa1File)

Add identifier annotation to records in GFA 1.0 format.

Parameters:

inputGfa1Path - input GFA 1.0 path, if any

outputGfa1File - output GFA 1.0 file, if any

Since:

2.1

Method Detail

call

public Integer call()
             throws Exception

Specified by:

call in interface Callable<Integer>

Throws:

Exception

main

public static void main(String[] args)

Main.

Parameters:

args - command line args