org.dishevelled.bio.tools

Class IntersectBed

java.lang.Object

org.dishevelled.bio.tools.IntersectBed

All Implemented Interfaces:

Callable<Integer>

public final class IntersectBed
extends Object
implements Callable<Integer>

Similar to bedtools2 intersect -v.

Author:

Michael Heuer

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
(package private) static interface	IntersectBed.Strategy Intersect BED strategy.

Constructor Summary

Constructors

Constructor and Description
IntersectBed(File aInputFile, File bInputFile, File outputFile, IntersectBed.Strategy strategy) Similar to bedtools2 intersect -v.
IntersectBed(Path aInputPath, Path bInputPath, File outputFile, IntersectBed.Strategy strategy) Similar to bedtools2 intersect -v.

Method Summary

Modifier and Type	Method and Description
Integer	call()
static void	main(String[] args) Main.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

IntersectBed

public IntersectBed(File aInputFile,
                    File bInputFile,
                    File outputFile,
                    IntersectBed.Strategy strategy)

Similar to bedtools2 intersect -v.

Parameters:

aInputFile - a input file, if any

bInputFile - b input file, must not be null

outputFile - output file, if any

strategy - strategy, must not be null

IntersectBed

public IntersectBed(Path aInputPath,
                    Path bInputPath,
                    File outputFile,
                    IntersectBed.Strategy strategy)

Similar to bedtools2 intersect -v.

Parameters:

aInputPath - a input path, if any

bInputPath - b input path, must not be null

outputFile - output file, if any

strategy - strategy, must not be null

Since:

2.1

Method Detail

call

public Integer call()
             throws Exception

Specified by:

call in interface Callable<Integer>

Throws:

Exception

main

public static void main(String[] args)

Main.

Parameters:

args - command line args