org.dishevelled.bio.tools

Class ReassemblePaths

java.lang.Object

org.dishevelled.bio.tools.ReassemblePaths

All Implemented Interfaces:

Callable<Integer>

public final class ReassemblePaths
extends Object
implements Callable<Integer>

Reassemble paths in GFA 1.0 format, recreating segments and overlaps fields from traversal records.

Since:

1.3.2

Author:

Michael Heuer

Constructor Summary

Constructors

Constructor and Description
ReassemblePaths(File inputGfa1File, File outputGfa1File) Reassemble paths in GFA 1.0 format, recreating segments and overlaps fields from traversal records.
ReassemblePaths(Path inputGfa1Path, File outputGfa1File) Reassemble paths in GFA 1.0 format, recreating segments and overlaps fields from traversal records.

Method Summary

Modifier and Type	Method and Description
Integer	call()
static void	main(String[] args) Main.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ReassemblePaths

public ReassemblePaths(File inputGfa1File,
                       File outputGfa1File)

Reassemble paths in GFA 1.0 format, recreating segments and overlaps fields from traversal records.

Parameters:

inputGfa1File - input GFA 1.0 file, if any

outputGfa1File - output GFA 1.0 file, if any

ReassemblePaths

public ReassemblePaths(Path inputGfa1Path,
                       File outputGfa1File)

Reassemble paths in GFA 1.0 format, recreating segments and overlaps fields from traversal records.

Parameters:

inputGfa1Path - input GFA 1.0 path, if any

outputGfa1File - output GFA 1.0 file, if any

Since:

2.1

Method Detail

call

public Integer call()
             throws Exception

Specified by:

call in interface Callable<Integer>

Throws:

Exception

main

public static void main(String[] args)

Main.

Parameters:

args - command line args