org.dishevelled.bio.tools

Class RemapPhaseSet

java.lang.Object

org.dishevelled.bio.tools.RemapPhaseSet

All Implemented Interfaces:

Callable<Integer>

public final class RemapPhaseSet
extends Object
implements Callable<Integer>

Remap PS Type=String phase set ids in VCF format to PS Type=Integer.

Author:

Michael Heuer

Constructor Summary

Constructors

Constructor and Description
RemapPhaseSet(File inputVcfFile, File outputVcfFile) Remap Type=String PS phase set ids in VCF format to Type=Integer.
RemapPhaseSet(Path inputVcfPath, File outputVcfFile) Remap Type=String PS phase set ids in VCF format to Type=Integer.

Method Summary

Modifier and Type	Method and Description
Integer	call()
static void	main(String[] args) Main.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RemapPhaseSet

public RemapPhaseSet(File inputVcfFile,
                     File outputVcfFile)

Remap Type=String PS phase set ids in VCF format to Type=Integer.

Parameters:

inputVcfFile - input VCF file, if any

outputVcfFile - output VCF file, if any

RemapPhaseSet

public RemapPhaseSet(Path inputVcfPath,
                     File outputVcfFile)

Remap Type=String PS phase set ids in VCF format to Type=Integer.

Parameters:

inputVcfPath - input VCF path, if any

outputVcfFile - output VCF file, if any

Since:

2.1

Method Detail

call

public Integer call()
             throws Exception

Specified by:

call in interface Callable<Integer>

Throws:

Exception

main

public static void main(String[] args)

Main.

Parameters:

args - command line args