org.dishevelled.bio.tools

Class SegmentsToCytoscapeNodes

java.lang.Object

org.dishevelled.bio.tools.SegmentsToCytoscapeNodes

All Implemented Interfaces:

Callable<Integer>

public final class SegmentsToCytoscapeNodes
extends Object
implements Callable<Integer>

Convert segments in GFA 1.0 format to nodes.txt format for Cytoscape.

Since:

2.1

Author:

Michael Heuer

Constructor Summary

Constructors

Constructor and Description
SegmentsToCytoscapeNodes(File inputGfa1File, File outputNodesFile) Convert segments in GFA 1.0 format to nodes.txt format for Cytoscape.
SegmentsToCytoscapeNodes(Path inputGfa1Path, File outputNodesFile) Convert segments in GFA 1.0 format to nodes.txt format for Cytoscape.

Method Summary

Modifier and Type	Method and Description
Integer	call()
static void	main(String[] args) Main.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SegmentsToCytoscapeNodes

public SegmentsToCytoscapeNodes(File inputGfa1File,
                                File outputNodesFile)

Convert segments in GFA 1.0 format to nodes.txt format for Cytoscape.

Parameters:

inputGfa1File - input GFA 1.0 file, if any

outputNodesFile - output nodes.txt file, if any

SegmentsToCytoscapeNodes

public SegmentsToCytoscapeNodes(Path inputGfa1Path,
                                File outputNodesFile)

Convert segments in GFA 1.0 format to nodes.txt format for Cytoscape.

Parameters:

inputGfa1Path - input GFA 1.0 path, if any

outputNodesFile - output nodes.txt file, if any

Since:

2.1

Method Detail

call

public Integer call()
             throws Exception

Specified by:

call in interface Callable<Integer>

Throws:

Exception

main

public static void main(String[] args)

Main.

Parameters:

args - command line args