org.dishevelled.bio.tools

Class TraversalsToPropertyGraph

java.lang.Object

org.dishevelled.bio.tools.TraversalsToPropertyGraph

All Implemented Interfaces:

Callable<Integer>

public final class TraversalsToPropertyGraph
extends Object
implements Callable<Integer>

Convert traversals in GFA 1.0 format to property graph CSV format.

Since:

2.1

Author:

Michael Heuer

Constructor Summary

Constructors

Constructor and Description
TraversalsToPropertyGraph(File inputGfa1File, File outputEdgesFile) Convert traversals in GFA 1.0 format to property graph CSV format.
TraversalsToPropertyGraph(Path inputGfa1Path, File outputEdgesFile) Convert traversals in GFA 1.0 format to property graph CSV format.

Method Summary

Modifier and Type	Method and Description
Integer	call()
static void	main(String[] args) Main.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

TraversalsToPropertyGraph

public TraversalsToPropertyGraph(File inputGfa1File,
                                 File outputEdgesFile)

Convert traversals in GFA 1.0 format to property graph CSV format.

Parameters:

inputGfa1File - input GFA 1.0 file, if any

outputEdgesFile - output traversal-edges.csv file, if any

TraversalsToPropertyGraph

public TraversalsToPropertyGraph(Path inputGfa1Path,
                                 File outputEdgesFile)

Convert traversals in GFA 1.0 format to property graph CSV format.

Parameters:

inputGfa1Path - input GFA 1.0 path, if any

outputEdgesFile - output traversal-edges.csv file, if any

Since:

2.1

Method Detail

call

public Integer call()
             throws Exception

Specified by:

call in interface Callable<Integer>

Throws:

Exception

main

public static void main(String[] args)

Main.

Parameters:

args - command line args