org.dishevelled.bio.tools

Class TruncatePaths

java.lang.Object

org.dishevelled.bio.tools.TruncatePaths

All Implemented Interfaces:

Callable<Integer>

public final class TruncatePaths
extends Object
implements Callable<Integer>

Truncate paths in GFA 1.0 format, removing segments and overlaps fields.

Since:

1.3.1

Author:

Michael Heuer

Constructor Summary

Constructors

Constructor and Description
TruncatePaths(File inputGfa1File, File outputGfa1File) Truncate paths in GFA 1.0 format, removing segments and overlaps fields.
TruncatePaths(Path inputGfa1Path, File outputGfa1File) Truncate paths in GFA 1.0 format, removing segments and overlaps fields.

Method Summary

Modifier and Type	Method and Description
Integer	call()
static void	main(String[] args) Main.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

TruncatePaths

public TruncatePaths(File inputGfa1File,
                     File outputGfa1File)

Truncate paths in GFA 1.0 format, removing segments and overlaps fields.

Parameters:

inputGfa1File - input GFA 1.0 file, if any

outputGfa1File - output GFA 1.0 file, if any

TruncatePaths

public TruncatePaths(Path inputGfa1Path,
                     File outputGfa1File)

Truncate paths in GFA 1.0 format, removing segments and overlaps fields.

Parameters:

inputGfa1Path - input GFA 1.0 path, if any

outputGfa1File - output GFA 1.0 file, if any

Since:

2.1

Method Detail

call

public Integer call()
             throws Exception

Specified by:

call in interface Callable<Integer>

Throws:

Exception

main

public static void main(String[] args)

Main.

Parameters:

args - command line args