org.dishevelled.bio.tools

Class VcfHeader

java.lang.Object

org.dishevelled.bio.tools.VcfHeader

All Implemented Interfaces:

Callable<Integer>

public final class VcfHeader
extends Object
implements Callable<Integer>

Extract and validate header lines from VCF format.

Author:

Michael Heuer

Constructor Summary

Constructors

Constructor and Description
VcfHeader(File inputVcfFile, File outputVcfHeaderFile, boolean validate) Extract and validate header lines from VCF format.
VcfHeader(Path inputVcfPath, File outputVcfHeaderFile, boolean validate) Extract and validate header lines from VCF format.

Method Summary

Modifier and Type	Method and Description
Integer	call()
static void	main(String[] args) Main.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

VcfHeader

public VcfHeader(File inputVcfFile,
                 File outputVcfHeaderFile,
                 boolean validate)

Extract and validate header lines from VCF format.

Parameters:

inputVcfFile - input VCF file, if any

outputVcfHeaderFile - output VCF header file, if any

validate - true to validate

VcfHeader

public VcfHeader(Path inputVcfPath,
                 File outputVcfHeaderFile,
                 boolean validate)

Extract and validate header lines from VCF format.

Parameters:

inputVcfPath - input VCF path, if any

outputVcfHeaderFile - output VCF header file, if any

validate - true to validate

Since:

2.1

Method Detail

call

public Integer call()
             throws Exception

Specified by:

call in interface Callable<Integer>

Throws:

Exception

main

public static void main(String[] args)

Main.

Parameters:

args - command line args