Package org.eclipse.pass.loader.nihms.entrez

Class PubMedEntrezRecord

java.lang.Object

org.eclipse.pass.loader.nihms.entrez.PubMedEntrezRecord

public class PubMedEntrezRecord
extends Object

Class is instantiated by passing in a JSONObject from Entrez representing a PubMed article record. Using getters you can then pull fields from that JSONObject

Author:

Karen Hanson

Constructor Summary

Constructors

Constructor	Description
PubMedEntrezRecord(org.json.JSONObject entrezJson)	Instantiate a PubMedRecord by passing in a JSONObject representing a single result from the PubMed database of the Entrez API.

Method Summary

Modifier and Type	Method	Description
String	getDoi()	Extract DOI from Entrez JSON as https://doi.org/10....
String	getEssn()	Extracts ESSN from Entrez JSON record and returns it
String	getIssn()	Extracts ISSN from Entrez JSON record and returns it
String	getIssue()	Extracts issue from Entrez JSON record and returns it
String	getPmid()	Extracts PMID from Entrez JSON record and returns it
String	getTitle()	Extracts title from Entrez JSON record and returns it
String	getVolume()	Extracts volume from Entrez JSON record and returns it

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

PubMedEntrezRecord

public PubMedEntrezRecord(org.json.JSONObject entrezJson)

Instantiate a PubMedRecord by passing in a JSONObject representing a single result from the PubMed database of the Entrez API. The root of this record starts at the PMID if the results JSON. Here is a sample record: https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&rettype=full&id=27771272

Parameters:

entrezJson - JSONObject for single PubMed record from Entrez API.

Method Details

getDoi

public String getDoi()

Extract DOI from Entrez JSON as https://doi.org/10....

Returns:

the doi

getPmid

public String getPmid()

Extracts PMID from Entrez JSON record and returns it

Returns:

the title

getTitle

public String getTitle()

Extracts title from Entrez JSON record and returns it

Returns:

the title

getVolume

public String getVolume()

Extracts volume from Entrez JSON record and returns it

Returns:

the volume

getIssue

public String getIssue()

Extracts issue from Entrez JSON record and returns it

Returns:

the issue

getIssn

public String getIssn()

Extracts ISSN from Entrez JSON record and returns it

Returns:

the ISSN

getEssn

public String getEssn()

Extracts ESSN from Entrez JSON record and returns it

Returns:

the ESSN