edu.emory.cci.aiw.cvrg.eureka.etl.spreadsheet

Class XlsxDataProvider

java.lang.Object

edu.emory.cci.aiw.cvrg.eureka.etl.spreadsheet.XlsxDataProvider

All Implemented Interfaces:

DataProvider

public class XlsxDataProvider
extends Object
implements DataProvider

An implementation of the DataProvider interface, using an Excel workbook as the data source.

Author:

hrathod

Constructor Summary

Constructors

Constructor and Description
XlsxDataProvider(File inDataFile, Locale locale) Create the data provider from the given data file.

Method Summary

Modifier and Type	Method and Description
void	close() Closes any underlying resources needed to read the data.
List<CPT>	getCptCodes() Get a list of CPT codes from the data.
File	getDataFile()
List<Encounter>	getEncounters() Get a list of encounters from the data.
List<Icd9Diagnosis>	getIcd9Diagnoses() Get a list of ICD9 Diagnostic codes from the data.
List<Icd9Procedure>	getIcd9Procedures() Get a list of ICD9 Procedure codes from the data.
List<Lab>	getLabs() Get a list of lab results from the data.
List<Medication>	getMedications() Get a list of medication from the data.
List<Patient>	getPatients() Get a list of patients from the data.
List<Provider>	getProviders() Get a list of providers from the data.
List<Vital>	getVitals() Get a list of vitals from the data.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

XlsxDataProvider

public XlsxDataProvider(File inDataFile,
                        Locale locale)
                 throws DataProviderException

Create the data provider from the given data file.

Parameters:

inDataFile - The Excel workbook file to use as the data store.

Throws:

DataProviderException - Thrown when the workbook can not be accessed, or parsed correctly.

Method Detail

getDataFile

public File getDataFile()

getPatients

public List<Patient> getPatients()
                          throws DataProviderException

Description copied from interface: DataProvider

Get a list of patients from the data.

Specified by:

getPatients in interface DataProvider

Returns:

A list of Patient objects.

Throws:

DataProviderException - if an error occurred reading patients from the data source.

getProviders

public List<Provider> getProviders()
                            throws DataProviderException

Description copied from interface: DataProvider

Get a list of providers from the data.

Specified by:

getProviders in interface DataProvider

Returns:

A list of Provider objects.

Throws:

DataProviderException - if an error occurred reading providers from the data source.

getEncounters

public List<Encounter> getEncounters()
                              throws DataProviderException

Description copied from interface: DataProvider

Get a list of encounters from the data.

Specified by:

getEncounters in interface DataProvider

Returns:

A list of Encounter objects.

Throws:

DataProviderException - if an error occurred reading encounters from the data source.

getCptCodes

public List<CPT> getCptCodes()
                      throws DataProviderException

Description copied from interface: DataProvider

Get a list of CPT codes from the data.

Specified by:

getCptCodes in interface DataProvider

Returns:

A list of CPT objects.

Throws:

DataProviderException - if an error occurred reading CPT codes from the data source.

getIcd9Diagnoses

public List<Icd9Diagnosis> getIcd9Diagnoses()
                                     throws DataProviderException

Description copied from interface: DataProvider

Get a list of ICD9 Diagnostic codes from the data.

Specified by:

getIcd9Diagnoses in interface DataProvider

Returns:

A list of Icd9Diagnosis objects.

Throws:

DataProviderException - if an error occurred reading ICD9 diagnosis codes from the data source.

getIcd9Procedures

public List<Icd9Procedure> getIcd9Procedures()
                                      throws DataProviderException

Description copied from interface: DataProvider

Get a list of ICD9 Procedure codes from the data.

Specified by:

getIcd9Procedures in interface DataProvider

Returns:

A list of Icd9Procedure objects.

Throws:

DataProviderException - if an error occurred reading ICD9 procedure codes from the data source.

getMedications

public List<Medication> getMedications()
                                throws DataProviderException

Description copied from interface: DataProvider

Get a list of medication from the data.

Specified by:

getMedications in interface DataProvider

Returns:

A list of Medication objects.

Throws:

DataProviderException - if an error occurred reading medication codes from the data source.

getLabs

public List<Lab> getLabs()
                  throws DataProviderException

Description copied from interface: DataProvider

Get a list of lab results from the data.

Specified by:

getLabs in interface DataProvider

Returns:

A list of Lab objects.

Throws:

DataProviderException - if an error occurred reading laboratory test results from the data source.

getVitals

public List<Vital> getVitals()
                      throws DataProviderException

Description copied from interface: DataProvider

Get a list of vitals from the data.

Specified by:

getVitals in interface DataProvider

Returns:

A list of Vital objects.

Throws:

DataProviderException - if an error occurred reading vital signs from the data source.

close

public void close()
           throws IOException

Description copied from interface: DataProvider

Closes any underlying resources needed to read the data. May be called multiple times. After the first time, nothing will happen.

Specified by:

close in interface DataProvider

Throws:

IOException - if an error occurred closing the underlying data source.