org.micromanager.remote

Class RemoteViewerStorageAdapter

java.lang.Object

org.micromanager.remote.RemoteViewerStorageAdapter

All Implemented Interfaces:

org.micromanager.acqj.api.DataSink, org.micromanager.ndviewer.api.DataSourceInterface

public class RemoteViewerStorageAdapter
extends Object
implements org.micromanager.ndviewer.api.DataSourceInterface, org.micromanager.acqj.api.DataSink

The class is the glue needed in order for Acquisition engine, viewer, and data storage to be able to be used together, since they are independent libraries that do not know about one another. It implements the Acquisition engine API for a DataSink interface, dispatching acquired images to viewer and storage as appropriate. It implements viewers DataSourceInterface interface, so that images in storage can be passed to the viewer to display.

Author:

henrypinkard

Constructor Summary

Constructors

Constructor and Description
RemoteViewerStorageAdapter(boolean showViewer, String dataStorageLocation, String name, boolean xyTiled, int tileOverlapX, int tileOverlapY, Integer maxResLevel, int savingQueueSize)

Method Summary

Modifier and Type	Method and Description
boolean	anythingAcquired()
void	close()
void	finish()
int[]	getBounds()
String	getDiskLocation()
int	getImageBitDepth(HashMap<String,Object> axesPositions)
mmcorej.TaggedImage	getImageForDisplay(HashMap<String,Object> axes, int resolutionindex, double xOffset, double yOffset, int imageWidth, int imageHeight)
Set<HashMap<String,Object>>	getImageKeys()
int	getMaxResolutionIndex()
org.micromanager.ndtiffstorage.NDTiffAPI	getStorage()
void	initialize(org.micromanager.acqj.main.Acquisition acq, mmcorej.org.json.JSONObject summaryMetadata)
boolean	isFinished()
void	putImage(mmcorej.TaggedImage taggedImg)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RemoteViewerStorageAdapter

public RemoteViewerStorageAdapter(boolean showViewer,
                                  String dataStorageLocation,
                                  String name,
                                  boolean xyTiled,
                                  int tileOverlapX,
                                  int tileOverlapY,
                                  Integer maxResLevel,
                                  int savingQueueSize)

Parameters:

showViewer - create and show a viewer

dataStorageLocation - where should data be saved to disk

name - name for data storage and viewer

xyTiled - true if using XY tiling/multiresolution features

tileOverlapX - X pixel overlap between adjacent tiles if using XY tiling/multiresolution

tileOverlapY - Y pixel overlap between adjacent tiles if using XY tiling/multiresolution

maxResLevel - The maximum resolution level index if using XY tiling/multiresolution

Method Detail

initialize

public void initialize(org.micromanager.acqj.main.Acquisition acq,
                       mmcorej.org.json.JSONObject summaryMetadata)

Specified by:

initialize in interface org.micromanager.acqj.api.DataSink

getStorage

public org.micromanager.ndtiffstorage.NDTiffAPI getStorage()

putImage

public void putImage(mmcorej.TaggedImage taggedImg)

Specified by:

putImage in interface org.micromanager.acqj.api.DataSink

getBounds

public int[] getBounds()

Specified by:

getBounds in interface org.micromanager.ndviewer.api.DataSourceInterface

getImageForDisplay

public mmcorej.TaggedImage getImageForDisplay(HashMap<String,Object> axes,
                                              int resolutionindex,
                                              double xOffset,
                                              double yOffset,
                                              int imageWidth,
                                              int imageHeight)

Specified by:

getImageForDisplay in interface org.micromanager.ndviewer.api.DataSourceInterface

getImageKeys

public Set<HashMap<String,Object>> getImageKeys()

Specified by:

getImageKeys in interface org.micromanager.ndviewer.api.DataSourceInterface

getMaxResolutionIndex

public int getMaxResolutionIndex()

Specified by:

getMaxResolutionIndex in interface org.micromanager.ndviewer.api.DataSourceInterface

getDiskLocation

public String getDiskLocation()

Specified by:

getDiskLocation in interface org.micromanager.ndviewer.api.DataSourceInterface

close

public void close()

Specified by:

close in interface org.micromanager.ndviewer.api.DataSourceInterface

getImageBitDepth

public int getImageBitDepth(HashMap<String,Object> axesPositions)

Specified by:

getImageBitDepth in interface org.micromanager.ndviewer.api.DataSourceInterface

finish

public void finish()

Specified by:

finish in interface org.micromanager.acqj.api.DataSink

isFinished

public boolean isFinished()

Specified by:

isFinished in interface org.micromanager.acqj.api.DataSink

anythingAcquired

public boolean anythingAcquired()

Specified by:

anythingAcquired in interface org.micromanager.acqj.api.DataSink