Package org.rcsb.strucmotif

Enum Motifs

java.lang.Object

java.lang.Enum<Motifs>

org.rcsb.strucmotif.Motifs

All Implemented Interfaces:

Serializable, Comparable<Motifs>, java.lang.constant.Constable

public enum Motifs
extends Enum<Motifs>

Motif definitions used in examples and tests.

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Enum

Enum.EnumDesc<E extends Enum<E>>

Enum Constant Summary

Enum Constants

Enum Constant	Description
CHCH	Original zinc finger.
CHH	Simplified zinc finger.
GGGG	RNA G-tetrad.
HDS	Catalytic triad.
KDDDE	Aminopeptidase.
KDEEH	Enolase superfamily.
KDEEH_EXCHANGES	Enolase superfamily with exchanges.

Method Summary

Modifier and Type	Method	Description
List<LabelSelection>	getLabelSelections()	The residues referenced by this motif.
PositionSpecificExchange[]	getPositionSpecificExchanges()	Potential position-specific exchanges for this motif.
String	getStructureIdentifier()	The structure identifier of this motif.
static Motifs	valueOf(String name)	Returns the enum constant of this type with the specified name.
static Motifs[]	values()	Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, describeConstable, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Details

HDS

public static final Motifs HDS

Catalytic triad.

KDDDE

public static final Motifs KDDDE

Aminopeptidase.

CHH

public static final Motifs CHH

Simplified zinc finger.

CHCH

public static final Motifs CHCH

Original zinc finger.

KDEEH

public static final Motifs KDEEH

Enolase superfamily.

KDEEH_EXCHANGES

public static final Motifs KDEEH_EXCHANGES

Enolase superfamily with exchanges.

GGGG

public static final Motifs GGGG

RNA G-tetrad.

Method Details

values

public static Motifs[] values()

Returns an array containing the constants of this enum type, in the order they are declared.

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static Motifs valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null

getStructureIdentifier

public String getStructureIdentifier()

The structure identifier of this motif.

Returns:

a String

getLabelSelections

public List<LabelSelection> getLabelSelections()

The residues referenced by this motif.

Returns:

a collection of LabelSelections

getPositionSpecificExchanges

public PositionSpecificExchange[] getPositionSpecificExchanges()

Potential position-specific exchanges for this motif.

Returns:

an array of exchanges