Package org.rcsb.strucmotif.core

Interface MotifPruner

All Known Implementing Classes:

KruskalMotifPruner, NoOperationMotifPruner

public interface MotifPruner

Pruning motifs is advantageous as it saves time (less lookups) and avoids too rigid criteria enforced during search.

Method Summary

Modifier and Type	Method	Description
List<ResiduePairOccurrence>	prune(Structure structure, List<LabelSelection> labelSelections, List<Map<LabelAtomId,float[]>> residues)	Perform pruning operation (e.g.

Method Details

prune

List<ResiduePairOccurrence> prune(Structure structure,
 List<LabelSelection> labelSelections,
 List<Map<LabelAtomId,float[]>> residues)

Perform pruning operation (e.g. extract all ResiduePairOccurrence instances from a structure and prune the resulting graph).

Parameters:

structure - the structure from which ResiduePairOccurrence instances will be extracted

labelSelections - the residue identifiers

residues - the manifested residues to work with, a subset of the structure

Returns:

the set of occurrences which describe this structure