Package org.rcsb.strucmotif.core

Class MotifSearchRuntimeImpl

java.lang.Object

org.rcsb.strucmotif.core.MotifSearchRuntimeImpl

All Implemented Interfaces:

MotifSearchRuntime

@Service
public class MotifSearchRuntimeImpl
extends Object
implements MotifSearchRuntime

The default strucmotif-search runtime.

Constructor Summary

Constructors

Constructor	Description
MotifSearchRuntimeImpl(TargetAssembler targetAssembler, ThreadPool threadPool, MotifSearchConfig motifSearchConfig, AlignmentService alignmentService, StructureDataProvider structureDataProvider, StateRepository stateRepository)	Injectable constructor.

Method Summary

Modifier and Type	Method	Description
MotifSearchResult	performSearch(MotifSearchQuery query)	Performs a structural motif search run for a given query.
void	performSearch(MotifSearchQuery query, Consumer<Hit> consumer)	Performs a structural motif search for a given query.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

MotifSearchRuntimeImpl

@Autowired
public MotifSearchRuntimeImpl(TargetAssembler targetAssembler,
 ThreadPool threadPool,
 MotifSearchConfig motifSearchConfig,
 AlignmentService alignmentService,
 StructureDataProvider structureDataProvider,
 StateRepository stateRepository)

Injectable constructor.

Parameters:

targetAssembler - target assembler

threadPool - thread pool

motifSearchConfig - app config

alignmentService - alignment service

structureDataProvider - structure data provider

stateRepository - global state, derived from loaded ddata

Method Details

performSearch

public MotifSearchResult performSearch(MotifSearchQuery query)

Description copied from interface: MotifSearchRuntime

Performs a structural motif search run for a given query.

Specified by:

performSearch in interface MotifSearchRuntime

Parameters:

query - the query, specifying motif and all parameters

Returns:

the result container

performSearch

public void performSearch(MotifSearchQuery query,
 Consumer<Hit> consumer)

Description copied from interface: MotifSearchRuntime

Performs a structural motif search for a given query.

Specified by:

performSearch in interface MotifSearchRuntime

Parameters:

query - the query, specifying motif and all parameters

consumer - some terminal operation that will be applied to each accepted hit