Package org.rcsb.strucmotif.core

Class NoOperationMotifPruner

java.lang.Object

org.rcsb.strucmotif.core.NoOperationMotifPruner

All Implemented Interfaces:

MotifPruner

@Service
public class NoOperationMotifPruner
extends Object
implements MotifPruner

Don't prune query motif. Merely extract all ResiduePairOccurrence instances.

Constructor Summary

Constructors

Constructor	Description
NoOperationMotifPruner(MotifSearchConfig motifSearchConfig)	Injectable constructor.

Method Summary

Modifier and Type	Method	Description
List<ResiduePairOccurrence>	prune(Structure structure, List<LabelSelection> labelSelections, List<Map<LabelAtomId,float[]>> residues)	Perform pruning operation (e.g.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

NoOperationMotifPruner

public NoOperationMotifPruner(MotifSearchConfig motifSearchConfig)

Injectable constructor.

Parameters:

motifSearchConfig - app config

Method Details

prune

public List<ResiduePairOccurrence> prune(Structure structure,
 List<LabelSelection> labelSelections,
 List<Map<LabelAtomId,float[]>> residues)

Description copied from interface: MotifPruner

Perform pruning operation (e.g. extract all ResiduePairOccurrence instances from a structure and prune the resulting graph).

Specified by:

prune in interface MotifPruner

Parameters:

structure - the structure from which ResiduePairOccurrence instances will be extracted

labelSelections - the residue identifiers

residues - the manifested residues to work with, a subset of the structure

Returns:

the set of occurrences which describe this structure