Package org.rcsb.strucmotif.core

Interface TargetAssembler

All Known Implementing Classes:

TargetAssemblerImpl

public interface TargetAssembler

Where the magic happens. Lookup all word occurrences which need to be fulfilled and combine them in the most efficient way.

Assembles the set of target structures to evaluate by focusing on the paths through targets. Basically, this is subgraph isomorphism: the query is a graph and we want to find all target structures which contain this query as a subgraph.

Method Summary

Modifier and Type	Method	Description
void	assemble(MotifSearchResult response)	Search: i.e.

Method Details

assemble

void assemble(MotifSearchResult response)
       throws ExecutionException,
InterruptedException

Search: i.e. find all paths through all target structures which reasonably resemble the structure of the query motif.

Parameters:

response - the container to work on

Throws:

ExecutionException - thrown by multi-threading impl

InterruptedException - thrown by multi-threading impl