Package org.rcsb.strucmotif.domain.align

Class AlignmentResultImpl

java.lang.Object

org.rcsb.strucmotif.domain.align.AlignmentResultImpl

All Implemented Interfaces:

AlignmentResult

public class AlignmentResultImpl
extends Object
implements AlignmentResult

The result of an alignment.

Constructor Summary

Constructors

Constructor	Description
AlignmentResultImpl(Transformation transformation, float rmsd)	Construct an alignment result.

Method Summary

Modifier and Type	Method	Description
float	getRootMeanSquareDeviation()	The score of this superposition.
Transformation	getTransformation()	The transformation which recreates this alignment when applied to the 2nd argument.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

AlignmentResultImpl

public AlignmentResultImpl(Transformation transformation,
 float rmsd)

Construct an alignment result.

Parameters:

transformation - applied transformation

rmsd - achieved score

Method Details

getTransformation

public Transformation getTransformation()

Description copied from interface: AlignmentResult

The transformation which recreates this alignment when applied to the 2nd argument.

Specified by:

getTransformation in interface AlignmentResult

Returns:

a Transformation which can be used to recreate this alignment

getRootMeanSquareDeviation

public float getRootMeanSquareDeviation()

Description copied from interface: AlignmentResult

The score of this superposition.

Specified by:

getRootMeanSquareDeviation in interface AlignmentResult

Returns:

a float