Uses of Class
org.rcsb.strucmotif.domain.Transformation

Packages that use Transformation

Package	Description
org.rcsb.strucmotif.align
org.rcsb.strucmotif.domain
org.rcsb.strucmotif.domain.align
org.rcsb.strucmotif.domain.result
org.rcsb.strucmotif.domain.structure

Uses of Transformation in org.rcsb.strucmotif.align

Methods in org.rcsb.strucmotif.align that return types with arguments of type Transformation

Modifier and Type	Method	Description
static Pair<Transformation,Float>	QuaternionAlignmentService.align(List<float[]> referencePoints, float[] referenceCentroid, List<float[]> candidatePoints, float[] candidateCentroid)	Align two set of residues.

Uses of Transformation in org.rcsb.strucmotif.domain

Fields in org.rcsb.strucmotif.domain declared as Transformation

Modifier and Type	Field	Description
static final Transformation	Transformation.IDENTITY_TRANSFORMATION

Methods in org.rcsb.strucmotif.domain that return Transformation

Modifier and Type	Method	Description
static Transformation	Transformation.of(float[][] transformation)

Uses of Transformation in org.rcsb.strucmotif.domain.align

Methods in org.rcsb.strucmotif.domain.align that return Transformation

Modifier and Type	Method	Description
Transformation	AlignmentResult.getTransformation()	The transformation which recreates this alignment when applied to the 2nd argument.
Transformation	AlignmentResultImpl.getTransformation()

Constructors in org.rcsb.strucmotif.domain.align with parameters of type Transformation

Modifier	Constructor	Description
	AlignmentResultImpl(Transformation transformation, float rmsd)	Construct an alignment result.

Uses of Transformation in org.rcsb.strucmotif.domain.result

Methods in org.rcsb.strucmotif.domain.result that return Transformation

Modifier and Type	Method	Description
Transformation	Hit.getTransformation()	Returns the transformation yielded by the underlying alignment.

Constructors in org.rcsb.strucmotif.domain.result with parameters of type Transformation

Modifier	Constructor	Description
	Hit(String structureIdentifier, String assemblyIdentifier, List<LabelSelection> labelSelections, List<ResidueType> residueTypes, float rmsd, Transformation transformation)	Construct a transformed hit (i.e., scored by an alignment).

Uses of Transformation in org.rcsb.strucmotif.domain.structure

Methods in org.rcsb.strucmotif.domain.structure that return Transformation

Modifier and Type	Method	Description
Transformation	Structure.getTransformation(String structOperIdentifier)	Access to a specific transformation.

Methods in org.rcsb.strucmotif.domain.structure that return types with arguments of type Transformation

Modifier and Type	Method	Description
Map<String,Transformation>	Structure.getTransformations()	Access to all transformations.