Package org.rcsb.strucmotif.domain.motif

Class InvertedIndexResiduePairIdentifier

java.lang.Object

org.rcsb.strucmotif.domain.motif.InvertedIndexResiduePairIdentifier

All Implemented Interfaces:

ResiduePairIdentifier

public class InvertedIndexResiduePairIdentifier
extends Object
implements ResiduePairIdentifier

A ResiduePairIdentifier defined by data from the inverted index. Just a wrapper for the raw data array.

Constructor Summary

Constructors

Constructor	Description
InvertedIndexResiduePairIdentifier(Object[] data, boolean flipped)	Construct an identifier based on raw data.

Method Summary

Modifier and Type	Method	Description
int	getIndex1()	The index of the first residue.
int	getIndex2()	The index of the second residue.
IndexSelection	getIndexSelection1()	The complex IndexSelection of the first residue.
IndexSelection	getIndexSelection2()	The complex IndexSelection of the second residue.
String	getStructOperId1()	The operator expression applied to the first residue.
String	getStructOperId2()	The operator expression applied to the second residue.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.strucmotif.domain.motif.ResiduePairIdentifier

indexSelections

Constructor Details

InvertedIndexResiduePairIdentifier

public InvertedIndexResiduePairIdentifier(Object[] data,
 boolean flipped)

Construct an identifier based on raw data.

Parameters:

data - an Object[] from the inverted index

flipped - true iff positions are flipped by the contract of ResiduePairDescriptor

Method Details

getStructOperId1

public String getStructOperId1()

Description copied from interface: ResiduePairIdentifier

The operator expression applied to the first residue.

Specified by:

getStructOperId1 in interface ResiduePairIdentifier

Returns:

a String

getIndex1

public int getIndex1()

Description copied from interface: ResiduePairIdentifier

The index of the first residue.

Specified by:

getIndex1 in interface ResiduePairIdentifier

Returns:

an int

getStructOperId2

public String getStructOperId2()

Description copied from interface: ResiduePairIdentifier

The operator expression applied to the second residue.

Specified by:

getStructOperId2 in interface ResiduePairIdentifier

Returns:

a String

getIndex2

public int getIndex2()

Description copied from interface: ResiduePairIdentifier

The index of the second residue.

Specified by:

getIndex2 in interface ResiduePairIdentifier

Returns:

an int

getIndexSelection1

public IndexSelection getIndexSelection1()

Description copied from interface: ResiduePairIdentifier

The complex IndexSelection of the first residue. If possible, use low-level methods that avoid object creation if data comes from the inverted index.

Specified by:

getIndexSelection1 in interface ResiduePairIdentifier

Returns:

an IndexSelection

getIndexSelection2

public IndexSelection getIndexSelection2()

Description copied from interface: ResiduePairIdentifier

The complex IndexSelection of the second residue. If possible, use low-level methods that avoid object creation if data comes from the inverted index.

Specified by:

getIndexSelection2 in interface ResiduePairIdentifier

Returns:

an IndexSelection