Package org.rcsb.strucmotif.domain.query

Class Parameters

java.lang.Object
org.rcsb.strucmotif.domain.query.Parameters
public class Parameters extends Object
Immutable instance capturing all parameters of a given search job.

  • Method Details

    • getBackboneDistanceTolerance

      public int getBackboneDistanceTolerance()
      The specified backbone distance tolerance value.
      Returns:
      the tolerance value

    • getSideChainDistanceTolerance

      public int getSideChainDistanceTolerance()
      The specified side-chain distance tolerance value.
      Returns:
      the tolerance value

    • getAngleTolerance

      public int getAngleTolerance()
      The specified angle tolerance value.
      Returns:
      the tolerance value

    • getRmsdCutoff

      public float getRmsdCutoff()
      At which RMSD are hits filtered?
      Returns:
      the rmsd cutoff value

    • getAtomPairingScheme

      public AtomPairingScheme getAtomPairingScheme()
      How are atoms paired?
      Returns:
      the atom pairing scheme

    • getMotifPruner

      public MotifPruner getMotifPruner()
      The motif pruning strategy applied.
      Returns:
      motif pruning impl

    • getLimit

      public int getLimit()
      Terminate the search after this many hits have been accepted.
      Returns:
      an int

    • hasLimit

      public boolean hasLimit()
      Report if the result count is limited.
      Returns:
      true if search will stop after a certain number of hits has been accepted.