Uses of Class
org.rcsb.strucmotif.domain.query.QueryBuilder.MandatoryBuilder
Packages that use QueryBuilder.MandatoryBuilder
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Uses of QueryBuilder.MandatoryBuilder in org.rcsb.strucmotif.domain.query
Methods in org.rcsb.strucmotif.domain.query that return QueryBuilder.MandatoryBuilderModifier and TypeMethodDescriptionQueryBuilder.MandatoryBuilder.angleTolerance(int angleTolerance) Specify the angle tolerance (default: 1).QueryBuilder.MandatoryBuilder.atomPairingScheme(AtomPairingScheme atomPairingScheme) Controls which atoms will be considered for alignment.QueryBuilder.MandatoryBuilder.backboneDistanceTolerance(int backboneDistanceTolerance) Specify the backbone distance tolerance (default: 1).QueryBuilder.defineByFile(InputStream inputStream) Routine if stream of structure data contains extracted motif.QueryBuilder.defineByFileAndSelection(InputStream inputStream, List<LabelSelection> selection) Define a motif based on a stream of structure data and a selection of components.QueryBuilder.defineByPdbIdAndSelection(String structureIdentifier, List<LabelSelection> selection) Define a motif based on the id of the reference structure and a selection of components.QueryBuilder.defineByStructureAndSelection(Structure structure, List<LabelSelection> labelSelections) Routine if structure files contains extracted motif.QueryBuilder.MandatoryBuilder.limitResults(int limit) Stop after a certain number of accepted hits.QueryBuilder.MandatoryBuilder.motifPruningStrategy(MotifPruningStrategy motifPruningStrategy) Specify the motif pruning strategy.QueryBuilder.MandatoryBuilder.motifPruningStrategy(MotifPruner motifPruner) Specify the motif pruning strategy.QueryBuilder.MandatoryBuilder.rmsdCutoff(double rmsdCutoff) Filter hits based on RMSD.QueryBuilder.MandatoryBuilder.sideChainDistanceTolerance(int sideChainDistanceTolerance) Specify the side-chain distance tolerance (default: 1).