Package org.rcsb.strucmotif.domain.result

Class Hit

java.lang.Object

org.rcsb.strucmotif.domain.result.Hit

public class Hit
extends Object

The result of a structural motif search.

Constructor Summary

Constructors

Constructor	Description
Hit(String structureIdentifier, String assemblyIdentifier, List<LabelSelection> labelSelections, List<ResidueType> residueTypes, float rmsd, Transformation transformation)	Construct a transformed hit (i.e., scored by an alignment).

Method Summary

Modifier and Type	Method	Description
String	getAssemblyIdentifier()
List<LabelSelection>	getLabelSelections()
List<ResidueType>	getResidueTypes()	Returns residue types (label_comp_id) of this hit.
float	getRootMeanSquareDeviation()	Returns the RMSD of this hit.
String	getStructureIdentifier()
Transformation	getTransformation()	Returns the transformation yielded by the underlying alignment.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

Hit

public Hit(String structureIdentifier,
 String assemblyIdentifier,
 List<LabelSelection> labelSelections,
 List<ResidueType> residueTypes,
 float rmsd,
 Transformation transformation)

Construct a transformed hit (i.e., scored by an alignment).

Parameters:

structureIdentifier - the entry ID

assemblyIdentifier - the assembly ID

labelSelections - selections for each matched residue

residueTypes - mapped residue types

rmsd - the alignment score

transformation - the transformation determined by the alignment

Method Details

getStructureIdentifier

public String getStructureIdentifier()

getAssemblyIdentifier

public String getAssemblyIdentifier()

getLabelSelections

public List<LabelSelection> getLabelSelections()

getResidueTypes

public List<ResidueType> getResidueTypes()

Returns residue types (label_comp_id) of this hit.

Returns:

an ordered set of residue types

getRootMeanSquareDeviation

public float getRootMeanSquareDeviation()

Returns the RMSD of this hit.

Returns:

a float

getTransformation

public Transformation getTransformation()

Returns the transformation yielded by the underlying alignment.

Returns:

a transformation object