Uses of Class
org.rcsb.strucmotif.domain.structure.IndexSelection

Packages that use IndexSelection

Package	Description
org.rcsb.strucmotif.domain.motif
org.rcsb.strucmotif.domain.query
org.rcsb.strucmotif.domain.structure

Uses of IndexSelection in org.rcsb.strucmotif.domain.motif

Methods in org.rcsb.strucmotif.domain.motif that return IndexSelection

Modifier and Type	Method	Description
IndexSelection	IndexResiduePairIdentifier.getIndexSelection1()
IndexSelection	InvertedIndexResiduePairIdentifier.getIndexSelection1()
IndexSelection	ResiduePairIdentifier.getIndexSelection1()	The complex IndexSelection of the first residue.
IndexSelection	IndexResiduePairIdentifier.getIndexSelection2()
IndexSelection	InvertedIndexResiduePairIdentifier.getIndexSelection2()
IndexSelection	ResiduePairIdentifier.getIndexSelection2()	The complex IndexSelection of the second residue.

Methods in org.rcsb.strucmotif.domain.motif that return types with arguments of type IndexSelection

Modifier and Type	Method	Description
default Stream<IndexSelection>	ResiduePairIdentifier.indexSelections()	Convenience method to access both IndexSelections.

Method parameters in org.rcsb.strucmotif.domain.motif with type arguments of type IndexSelection

Modifier and Type	Method	Description
Stream<ResiduePairDescriptor>	ResiduePairOccurrence.residuePairDescriptorsByTolerance(int backboneTolerance, int sideChainTolerance, int angleTolerance, Map<IndexSelection,Set<ResidueType>> exchanges)	Traverse all ResiduePairDescriptor instances which are compatible to this one given the specified parameters and registered position-specific exchanges (if any).

Constructors in org.rcsb.strucmotif.domain.motif with parameters of type IndexSelection

Modifier	Constructor	Description
	IndexResiduePairIdentifier(IndexSelection indexSelection1, IndexSelection indexSelection2)	Construct an identifier from 2 IndexSelections.

Uses of IndexSelection in org.rcsb.strucmotif.domain.query

Methods in org.rcsb.strucmotif.domain.query that return types with arguments of type IndexSelection

Modifier and Type	Method	Description
List<IndexSelection>	QueryStructure.getIndexSelections()	All selections of this query structure.

Uses of IndexSelection in org.rcsb.strucmotif.domain.structure

Methods in org.rcsb.strucmotif.domain.structure that return types with arguments of type IndexSelection

Modifier and Type	Method	Description
Stream<Pair<IndexSelection,IndexSelection>>	ResidueGraph.pairingsParallel()	Allows to traverse all pairings.
Stream<Pair<IndexSelection,IndexSelection>>	ResidueGraph.pairingsParallel()	Allows to traverse all pairings.
Stream<Pair<IndexSelection,IndexSelection>>	ResidueGraph.pairingsSequential()	Allows to sequentially traverse all pairings.
Stream<Pair<IndexSelection,IndexSelection>>	ResidueGraph.pairingsSequential()	Allows to sequentially traverse all pairings.

Methods in org.rcsb.strucmotif.domain.structure with parameters of type IndexSelection

Modifier and Type	Method	Description
float	ResidueGraph.getAngle(IndexSelection residue1, IndexSelection residue2)	Reports the angle between 2 residues.
float	ResidueGraph.getBackboneDistance(IndexSelection residue1, IndexSelection residue2)	Reports the distance of backbone of 2 residues.
float	ResidueGraph.getSideChainDistance(IndexSelection residue1, IndexSelection residue2)	Reports the distance of side-chains of 2 residues.