Uses of Enum
org.rcsb.strucmotif.domain.structure.LabelAtomId

Packages that use LabelAtomId

Package	Description
org.rcsb.strucmotif.align
org.rcsb.strucmotif.core
org.rcsb.strucmotif.domain.align
org.rcsb.strucmotif.domain.query
org.rcsb.strucmotif.domain.structure

Uses of LabelAtomId in org.rcsb.strucmotif.align

Method parameters in org.rcsb.strucmotif.align with type arguments of type LabelAtomId

Modifier and Type	Method	Description
AlignmentResult	AlignmentService.align(List<Map<LabelAtomId,float[]>> reference, List<Map<LabelAtomId,float[]>> candidate, AtomPairingScheme atomPairingScheme)	Aligns 2 sets of residues to one another.
AlignmentResult	QuaternionAlignmentService.align(List<Map<LabelAtomId,float[]>> reference, List<Map<LabelAtomId,float[]>> candidate, AtomPairingScheme atomPairingScheme)

Uses of LabelAtomId in org.rcsb.strucmotif.core

Method parameters in org.rcsb.strucmotif.core with type arguments of type LabelAtomId

Modifier and Type	Method	Description
AlignmentResult	HitScorer.alignToReference(List<Map<LabelAtomId,float[]>> targetResidues)	Align a set of residues to the reference.

Constructor parameters in org.rcsb.strucmotif.core with type arguments of type LabelAtomId

Modifier	Constructor	Description
	HitScorer(List<Map<LabelAtomId,float[]>> queryResidues, AtomPairingScheme atomPairingScheme, AlignmentService alignmentService)	Construct a query-specific hit scorer.

Uses of LabelAtomId in org.rcsb.strucmotif.domain.align

Methods in org.rcsb.strucmotif.domain.align with parameters of type LabelAtomId

Modifier and Type	Method	Description
boolean	AtomPairingScheme.test(LabelAtomId s)

Constructor parameters in org.rcsb.strucmotif.domain.align with type arguments of type LabelAtomId

Modifier	Constructor	Description
	AtomCorrespondence(List<Map<LabelAtomId,float[]>> reference, List<Map<LabelAtomId,float[]>> candidate, AtomPairingScheme atomPairingScheme)	Finds the correspondence between reference and candidate.

Uses of LabelAtomId in org.rcsb.strucmotif.domain.query

Methods in org.rcsb.strucmotif.domain.query that return types with arguments of type LabelAtomId

Modifier and Type	Method	Description
List<Map<LabelAtomId,float[]>>	QueryStructure.getResidues()

Uses of LabelAtomId in org.rcsb.strucmotif.domain.structure

Methods in org.rcsb.strucmotif.domain.structure that return LabelAtomId

Modifier and Type	Method	Description
static LabelAtomId	LabelAtomId.ofLabelAtomId(String labelAtomId)	Resolve a label_atom_id.
static LabelAtomId	LabelAtomId.valueOf(String name)	Returns the enum constant of this type with the specified name.
static LabelAtomId[]	LabelAtomId.values()	Returns an array containing the constants of this enum type, in the order they are declared.

Methods in org.rcsb.strucmotif.domain.structure that return types with arguments of type LabelAtomId

Modifier and Type	Method	Description
Map<LabelAtomId,float[]>	Structure.manifestResidue(int residueIndex)	Manifest a residue by its index.
Map<LabelAtomId,float[]>	Structure.manifestResidue(int residueIndex, String structOperIdentifier)	'Manifests' a residue, i.e.
Map<LabelAtomId,float[]>	Structure.manifestResidue(LabelSelection labelSelection)	Manifest a residue by its LabelSelection.
List<Map<LabelAtomId,float[]>>	Structure.manifestResidues(List<LabelSelection> labelSelections)	Manifest a collection of residues by their LabelSelection.