Uses of Enum
org.rcsb.strucmotif.domain.structure.LabelAtomId
Packages that use LabelAtomId
Package
Description
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Uses of LabelAtomId in org.rcsb.strucmotif.align
Method parameters in org.rcsb.strucmotif.align with type arguments of type LabelAtomIdModifier and TypeMethodDescriptionAlignmentService.align(List<Map<LabelAtomId, float[]>> reference, List<Map<LabelAtomId, float[]>> candidate, AtomPairingScheme atomPairingScheme) Aligns 2 sets of residues to one another.QuaternionAlignmentService.align(List<Map<LabelAtomId, float[]>> reference, List<Map<LabelAtomId, float[]>> candidate, AtomPairingScheme atomPairingScheme) -
Uses of LabelAtomId in org.rcsb.strucmotif.core
Method parameters in org.rcsb.strucmotif.core with type arguments of type LabelAtomIdModifier and TypeMethodDescriptionHitScorer.alignToReference(List<Map<LabelAtomId, float[]>> targetResidues) Align a set of residues to the reference.Constructor parameters in org.rcsb.strucmotif.core with type arguments of type LabelAtomIdModifierConstructorDescriptionHitScorer(List<Map<LabelAtomId, float[]>> queryResidues, AtomPairingScheme atomPairingScheme, AlignmentService alignmentService) Construct a query-specific hit scorer. -
Uses of LabelAtomId in org.rcsb.strucmotif.domain.align
Methods in org.rcsb.strucmotif.domain.align with parameters of type LabelAtomIdConstructor parameters in org.rcsb.strucmotif.domain.align with type arguments of type LabelAtomIdModifierConstructorDescriptionAtomCorrespondence(List<Map<LabelAtomId, float[]>> reference, List<Map<LabelAtomId, float[]>> candidate, AtomPairingScheme atomPairingScheme) Finds the correspondence between reference and candidate. -
Uses of LabelAtomId in org.rcsb.strucmotif.domain.query
Methods in org.rcsb.strucmotif.domain.query that return types with arguments of type LabelAtomId -
Uses of LabelAtomId in org.rcsb.strucmotif.domain.structure
Methods in org.rcsb.strucmotif.domain.structure that return LabelAtomIdModifier and TypeMethodDescriptionstatic LabelAtomIdLabelAtomId.ofLabelAtomId(String labelAtomId) Resolve a label_atom_id.static LabelAtomIdReturns the enum constant of this type with the specified name.static LabelAtomId[]LabelAtomId.values()Returns an array containing the constants of this enum type, in the order they are declared.Methods in org.rcsb.strucmotif.domain.structure that return types with arguments of type LabelAtomIdModifier and TypeMethodDescriptionMap<LabelAtomId,float[]> Structure.manifestResidue(int residueIndex) Manifest a residue by its index.Map<LabelAtomId,float[]> Structure.manifestResidue(int residueIndex, String structOperIdentifier) 'Manifests' a residue, i.e.Map<LabelAtomId,float[]> Structure.manifestResidue(LabelSelection labelSelection) Manifest a residue by its LabelSelection.List<Map<LabelAtomId,float[]>> Structure.manifestResidues(List<LabelSelection> labelSelections) Manifest a collection of residues by their LabelSelection.