Uses of Enum
org.rcsb.strucmotif.domain.structure.ResidueType

Packages that use ResidueType

Package	Description
org.rcsb.strucmotif.domain.motif
org.rcsb.strucmotif.domain.query
org.rcsb.strucmotif.domain.result
org.rcsb.strucmotif.domain.structure

Uses of ResidueType in org.rcsb.strucmotif.domain.motif

Methods in org.rcsb.strucmotif.domain.motif that return ResidueType

Modifier and Type	Method	Description
ResidueType	ResiduePairDescriptor.getResidueType1()	Residue type (label_comp_id) of first element.
ResidueType	ResiduePairDescriptor.getResidueType2()	Residue type (label_comp_id) of second element.

Method parameters in org.rcsb.strucmotif.domain.motif with type arguments of type ResidueType

Modifier and Type	Method	Description
Stream<ResiduePairDescriptor>	ResiduePairOccurrence.residuePairDescriptorsByTolerance(int backboneTolerance, int sideChainTolerance, int angleTolerance, Map<IndexSelection,Set<ResidueType>> exchanges)	Traverse all ResiduePairDescriptor instances which are compatible to this one given the specified parameters and registered position-specific exchanges (if any).

Constructors in org.rcsb.strucmotif.domain.motif with parameters of type ResidueType

Modifier	Constructor	Description
	ResiduePairDescriptor(ResidueType residueType1, ResidueType residueType2, DistanceType backboneDistance, DistanceType sideChainDistance, AngleType angle)	Construct a residue pair descriptor capturing all properties of this pair.

Uses of ResidueType in org.rcsb.strucmotif.domain.query

Methods in org.rcsb.strucmotif.domain.query that return types with arguments of type ResidueType

Modifier and Type	Method	Description
Map<LabelSelection,Set<ResidueType>>	MotifSearchQuery.getExchanges()	All specified exchanges.
Set<ResidueType>	PositionSpecificExchange.getResidueTypes()	The set of allowed component types at that position.

Method parameters in org.rcsb.strucmotif.domain.query with type arguments of type ResidueType

Modifier and Type	Method	Description
QueryBuilder.OptionalStepBuilder	QueryBuilder.OptionalStepBuilder.addPositionSpecificExchange(LabelSelection labelSelection, Collection<ResidueType> residueTypes)	Register an exchange by specifying a 'range'/collection of component types.

Constructors in org.rcsb.strucmotif.domain.query with parameters of type ResidueType

Modifier	Constructor	Description
	PositionSpecificExchange(LabelSelection labelSelection, ResidueType... residueTypes)

Constructor parameters in org.rcsb.strucmotif.domain.query with type arguments of type ResidueType

Modifier	Constructor	Description
	PositionSpecificExchange(LabelSelection labelSelection, Set<ResidueType> residueTypes)	Constructs a new position-specific exchange.

Uses of ResidueType in org.rcsb.strucmotif.domain.result

Methods in org.rcsb.strucmotif.domain.result that return types with arguments of type ResidueType

Modifier and Type	Method	Description
List<ResidueType>	Hit.getResidueTypes()	Returns residue types (label_comp_id) of this hit.

Uses of ResidueType in org.rcsb.strucmotif.domain.structure

Methods in org.rcsb.strucmotif.domain.structure that return ResidueType

Modifier and Type	Method	Description
ResidueType	Structure.getResidueType(int residueIndex)	Reports the residue type/amino acid at a certain index.
static ResidueType	ResidueType.ofOneLetterCode(String oneLetterCode)	Resolve a one-letter-code.
static ResidueType	ResidueType.ofThreeLetterCode(String labelCompId)	Maps labelCompId values to the correct ResidueType.
static ResidueType	ResidueType.valueOf(String name)	Returns the enum constant of this type with the specified name.
static ResidueType[]	ResidueType.values()	Returns an array containing the constants of this enum type, in the order they are declared.