Package org.rcsb.strucmotif.io

Class StructureWriterImpl

java.lang.Object

org.rcsb.strucmotif.io.StructureWriterImpl

All Implemented Interfaces:

StructureWriter

@Service
public class StructureWriterImpl
extends Object
implements StructureWriter

This implementation keeps a sparse representation of structure data including:

• label_asym_id
• label_seq_id
• label_comp_id
• label_atom_id
• coordinates
• entry identifier and data used for assembly generation

This implementation ignores:

• models with number unequal to 1
• hydrogen atoms
• non-polymer groups
• 2nd and all subsequent alt locs

Constructor Summary

Constructors

Constructor	Description
StructureWriterImpl()	Construct a writer.

Method Summary

Modifier and Type	Method	Description
void	write(org.rcsb.cif.schema.mm.MmCifFile source, Path destination)	Write structure data to the file system.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

StructureWriterImpl

public StructureWriterImpl()

Construct a writer.

Method Details

write

public void write(org.rcsb.cif.schema.mm.MmCifFile source,
 Path destination)

Description copied from interface: StructureWriter

Write structure data to the file system.

Specified by:

write in interface StructureWriter

Parameters:

source - a MmCifFile to process

destination - where to write data