Class SequenceEntry

    • Field Detail

      • locationInContainerInBits

        protected int locationInContainerInBits
        if the referenceLocation is containerStart, then this is number of bits from the start for previousEntry, this is the number of bits from where the previous entry ends
    • Method Detail

      • getContainer

        public Container getContainer()
      • setLocationInContainerInBits

        public void setLocationInContainerInBits​(int locationInBits)
      • getLocationInContainerInBits

        public int getLocationInContainerInBits()
      • setLocation

        public void setLocation​(SequenceEntry.ReferenceLocationType type,
                                int locationInBits)
        Set the location of this entry in the container.
        Parameters:
        type - - where to count the bits from
        locationInBits - - number of bits to count
      • getIndex

        public int getIndex()
      • getRepeatEntry

        public Repeat getRepeatEntry()
      • setRepeatEntry

        public void setRepeatEntry​(Repeat repeat)
      • getIncludeCondition

        public MatchCriteria getIncludeCondition()
      • setIncludeCondition

        public void setIncludeCondition​(MatchCriteria includeCondition)